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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g060460.1 | ||||||||
Common Name | MTR_4g060460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARF | ||||||||
Protein Properties | Length: 793aa MW: 88098.6 Da PI: 6.8057 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + + Medtr4g060460.1 166 FCKTLTVSDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGQ 256 99****************************9977754.569************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ Medtr4g060460.1 257 NGELRLGIRRA 267 9999***9986 PP | |||||||
2 | Auxin_resp | 119.3 | 3e-39 | 292 | 374 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFvv+++k++k++k+++++G+Rfkm++e+++s+err+ sG+ +g++dldp+rWp+SkWr+L Medtr4g060460.1 292 VANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMRIEMDESPERRCsSGMLIGINDLDPYRWPKSKWRCL 374 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-42 | 158 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-39 | 159 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-21 | 164 | 266 | No hit | No description |
SMART | SM01019 | 8.0E-24 | 166 | 268 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-21 | 166 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-33 | 292 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.135 | 663 | 745 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.22E-10 | 665 | 742 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MEIDLNNEVI EVEKNALCHK ECEKGFCFCV SCLSPSTCSS SSSTSPLVSS SYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQFASFSPF KQLEIPNYDL QPQIFCRVVN VQLLANKEND 120 EVYTQVTLLP QAELAGMHME GKEVEELEGD EEGDGGSPTK STPHMFCKTL TVSDTSTHGG 180 FSVPRRAAED CFPPLDYKLQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVN 240 QKNLVSGDAV LFLRGQNGEL RLGIRRAVRP RNGLPESIVG NQNCYPNFLS SVANAISTKS 300 MFHVFYSPRA SHAEFVVPYQ KYVKSIKNPM TIGTRFKMRI EMDESPERRC SSGMLIGIND 360 LDPYRWPKSK WRCLMVRWDD DTETNHQDRV SPWEIDPSSP QPPLSIQSSP RLKKPRTGLL 420 VASPNHLITG MNPNGISGMM GFEESVRSPK VLQGQENTGF MSLYYGCDKV TNQPGFELST 480 SSHHQNLAST GIGKVVTSSE LMSVHPFSYA GFMESNNFPR VLQGQEICKL KSLSGKVDFN 540 IGAWGTKPSF QSACFPYGDI DKSNQASMFS SKHTSFMSDN VPFNTPSIVA GDIRKEVGRS 600 GSNLLPNEHK LQDNVSASAS LVDTNRNAPN DNNVKGKANS CKLFGFPLSG EPSSQNLQNT 660 AKRSCTKVHK QGSLVGRAID LSRLSGYNDL LSELEKLFGM EGLLRDSDKG WRILYTDSEN 720 DIMVVGDDPW HEFCDVVSKI HIYTKEEVEK MTFGMMTNDD THSCLDQAPV IIEPSKSSSV 780 GQPDYSPTVV RV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldx_A | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldx_B | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldy_A | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
4ldy_B | 1e-118 | 54 | 397 | 22 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152176 | 0.0 | AC152176.5 Medicago truncatula clone mth2-65c4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606448.2 | 0.0 | auxin response factor-like protein | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | G7JQF5 | 0.0 | G7JQF5_MEDTR; Auxin response factor | ||||
STRING | GLYMA12G07560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g060460.1 |
Entrez Gene | 11406453 |
Publications ? help Back to Top | |||
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